To follow along with the practice in this course, you will use command line tools and R installed on your computer. Additionally, you will have to install the softwares and R libraries we will be using.
Download Raw data for this course
Command line tools for preprocessing reads and read alignment: FASTQC STAR samtools subread
Download and install Interactive Genome Viewer (IGV)
R and its libraries for differential expression analysis: R studio
Bioconductr libraries (check out each library for installation guide):
Regular libraries (install by entering install.packages("name")
):